-
Part
of a startup built on the topic of my UCSF research. Semantic search
for clinical trials. [graph store/s]
2019 - 2023
Sr
Research Software Engineer isda.ncsa.uiuc.edu/~mbobak
-
All
the PoCs for earthcube.org/geocodes incl.
organizing others to bring in a great NSF review
-
Focus
on semantics/metadata search, with some NLP and sim. [Python/SPARQL…]
2018 - 2019
Sr
Engineer, Natural Systems nutrienagsolutions.com/agrible
prepared them for the acquisition
-
Ag-informatics/sim/...
Planned and guided reworking the main simulation, documentation and
ML/verification [Python]
2011 - 2018
Consultant,
freelance: allotrop.org
ideo.com siemens.com
…
-
Ontologist, aligning bio/pharma ontologies to BFO to annotate masses
of data in HDF5 files, osthus.com work for allotrope.org
-
Worked with IDEO on their systems integration / information
refinement and cleanup
-
Worked with the Siemens Web of Things research group on use of
Semantic-Web+IoT for adaptable manufacturing
-
Advised start-ups in AI: fashion blog to trends, sport dbpedia.org
info, work chatbot
-
Developed ideas to take my UCSF research to Patient Data Mining
Cluster, via patent application
-
Looked at UCSF in Psychology Department’s PRIME mental health app
could benefit from NLP insights
-
Coursera: Data Analysis, Data Science (with distinction), Machine
Learning (with distinction), Discrete Optimization (audit)
- openHPI: Semantic Web, Knowledge Engineering, Knowledge-Engineering
w/Semantic Web technology, Linked-Data-Engineering
- Stanford: Design Thinking
2010 - 2011
Architect,
Adaptive
Learning Platform ApolloGrp.edu
-
Conceptually annotated study material and tests for automated
remediation, instrumented classroom to learn from use [Hadoop]
2007 - 2010
Programmer/Analyst
III ucsf.edu
-
Medical-Informatics research (relating
to clinical-trails) in Lisp/KM, and Natural-Language-Processing in
Java/etc.;
-
paper with
Stanford group; ontology dev/use
[Lisp, KM, ..]
2001 - 2007
Consultant,
freelance: mindbox.com,
Verizon.com,
lbl.gov,
ghx.com, cme.com
-
mindbox.com 3/02-10/02.
[used Art*Enterprise] See: Ocwen_Mindbox
-
Worked up to half-time for cas.dis.anl.gov
5/03-5/04 [Java Simulation]
-
Worked full-time 8/03-~05(Verizon)labs.gte.com,
Model-Based-Diagnosis on a national scale. [Art *Enterprise]
See: IAAI96-287.pdf
-
Bioinformatics/control contract 11/04-12/05
[CLIPS&Protege.]
Control of perfusion pumps on light microscope sample, monitoring
incl. Machine-vision, Bio-ontology/reasoning/Kn-mngt for the
experiment setup. & Grant on proposal
-
Worked for CME.com 2/06-06/06 (re)organizing trade-data validation
code. [CLIPS/Jess]
-
Signal-Processing/Machine-Learning (startup) 06/06-[Lisp/etc.]
-
Hospital Informatics/Machine-Learning ghx.com 02/07-05/07-[Lisp]
-
Machine-Learning speedup for financial-scientific [Lisp]
1998 - 2001
Research-Programmer
kbs.ai.uiuc.edu
-
Organized
many levels of a very large knowledge-based simulation projects.
-
Brought over 18 programmers together to deliver a coherent product.
-
Ran weekly (sub)group meetings, overall direction to help solving any
problem.
-
Hiring, demo, design, install trips, prototyping to lead project
direction.
-
Taught group of 6 how to use a Rule-Based-shell for a
reasoner-rewrite in Art*Enterprise.
-
Projects included: Simulation-based, Intelligent Tutoring System
(ITS) & Real-Time control system.
–
Being
used in classroom, real life testing, presented at IAAI99 'Automated
Instructor Assistant for Ship Damage Control' The system teaches Navy
officers how to save a simulated ship in crisis.
-A
variant was developed to catch real-time crisis conditions and
suggest solutions www.dwilkins.org/members.htm
1996 - 1998
Knowledge-Engineer
brightware.com
-
Helped
develop and install their very first
product (Intelligent email reply).
Worked between development and consulting.
-Worked
on several deployed Knowledge-Based business applications (i.e.
financial: mortgage, web-based job finder).
[Art*Enterprise]See: http://www.brightware.com/eservice_solutions/
later
½ year for the new version of the company: Mindbox.
1996
Lead
Programmer/Analyst Institute
for Learning Sciences
-
Wrote
Lisp code (mainly GUI) for the Qualitative Research Group.
-
Learned more about Qualitative/Quantitative Simulation, Model-Based
Reasoning, Intelligent-Tutoring-Systems, & general Lisp
programming.
See: http://www.qrg.northwestern.edu/projects/NSF/Cyclepad/aboutcp.htm
1993 - 1996
Software-Engineer
anl.gov
-
EAD then DIS groups:
Wrote
fielded Expert System by myself at the end of grad-school. [in Lisp
rule-shell then CLIPS]
-
Wrote agent-based, data-driven, goal directed control of distributed
simulation by wrapping the sim/tools in a rule shell, and allowing
for mixing & matching of parts, and setup, as the need arose [
C++/Smalltalk/FORTRAN wrapped w/CLIPS &com via PVM]
-
Other work as needed. Algo/Viz/Etc. Written up in a book about
innovative distributed object application.
See: http://www.dis.anl.gov/DEEM HLAsim http://www.dis.anl.gov/DEEM/DIAS diaswp.pdf
_More
recently I worked part-time for the new subgroup of
dis: cas.dis.anl.gov.
1988 - 1989
Programmer/Consultant:
Shearson Lehman Hutton, GIST, NCSA/uiuc.edu,
-
Between
degrees, I did a work abroad in a stock brokerage in London, came
back to get a C testing position, a contract with NCSA to see what to
do after it’s early browser & other tools, and a molecular viz
job that turned into my assistantship.
Education
October 1993
MS
Biophysics & Computational Biology, with focus in AI
University
of Illinois, Urbana-Champaign
Thesis:
Molecular Simulation with Expert Rules (in OPS5/Lisp/C)
May 1988
B.S.
Physics and B.S. Biophysics
with departmental distinction, while a published ½
time
research-programmer
University
of Illinois, Urbana-Champaign
